Journal of DNA And RNA Research

Journal of DNA And RNA Research

Journal of DNA And RNA Research – Aim And Scope

Open Access & Peer-Reviewed

Submit Manuscript

Aims & Scope

Journal of DNA and RNA Research (JDRR) publishes original investigations and methodological innovations that advance understanding of nucleic acid structure, function, regulation, and application across molecular biology, genetics, genomics, and synthetic biology systems.
DNA Structure & Function RNA Biology Gene Regulation Genomics & Epigenetics Nucleic Acid Technologies

Core Research Domains

Tier 1 Core

DNA Structure & Dynamics

  • DNA topology, supercoiling, and conformational dynamics
  • DNA-protein interactions and chromatin architecture
  • DNA damage, repair mechanisms, and mutagenesis
  • DNA replication fidelity and replication fork dynamics
  • DNA methylation patterns and epigenetic modifications
  • DNA nanotechnology and origami structures
Typical fit: Structural analysis of DNA G-quadruplexes in telomeric regions using crystallography and molecular dynamics simulations to understand their role in genome stability.
Tier 1 Core

RNA Biology & Regulation

  • RNA processing, splicing, and post-transcriptional modifications
  • Non-coding RNA function (miRNA, lncRNA, circRNA, siRNA)
  • RNA-protein complexes and ribonucleoprotein assembly
  • RNA stability, degradation pathways, and quality control
  • RNA localization and transport mechanisms
  • RNA structure-function relationships and folding dynamics
Typical fit: Characterization of long non-coding RNA interactions with chromatin remodeling complexes using CLIP-seq and functional validation in gene silencing pathways.
Tier 1 Core

Gene Expression & Regulation

  • Transcriptional regulation and promoter architecture
  • Enhancer-promoter interactions and 3D genome organization
  • Transcription factor binding dynamics and cooperativity
  • RNA polymerase mechanisms and transcription elongation
  • Translational control and ribosome profiling
  • Gene silencing mechanisms and epigenetic regulation
Typical fit: Genome-wide mapping of enhancer-promoter loops using Hi-C and ChIA-PET to identify regulatory networks controlling developmental gene expression.
Tier 1 Core

Genomics & Genome Engineering

  • Genome sequencing technologies and assembly methods
  • Comparative genomics and evolutionary analysis
  • CRISPR-Cas systems and genome editing applications
  • Genetic variation, SNPs, and structural variants
  • Mitochondrial and chloroplast genome organization
  • Transposable elements and genome plasticity
Typical fit: Development of base editing tools with improved specificity for correcting pathogenic mutations, validated through whole-genome sequencing for off-target analysis.

Secondary Focus Areas

Nucleic Acid Technologies

Novel methods for nucleic acid synthesis, modification, detection, and sequencing. Development of DNA/RNA-based biosensors, diagnostic platforms, and analytical tools. Advances in single-molecule techniques and high-throughput screening approaches.

Computational Nucleic Acid Biology

Bioinformatics tools for genome annotation, RNA structure prediction, and sequence analysis. Machine learning applications in predicting DNA-protein binding, RNA folding, and regulatory element identification. Algorithm development for next-generation sequencing data analysis.

Synthetic Biology Applications

Design and construction of synthetic genetic circuits and regulatory networks. Artificial nucleic acid systems for biotechnology applications. DNA data storage and molecular computing. Engineered RNA devices for cellular control and therapeutic applications.

Nucleic Acids in Disease

Molecular mechanisms of genetic disorders at the nucleic acid level. DNA/RNA biomarkers for disease diagnosis and prognosis. Nucleic acid-based therapeutics including antisense oligonucleotides, RNA interference, and gene therapy vectors. Pharmacogenomics and personalized medicine approaches.

Emerging Research Areas

Selective Consideration with Additional Review

Epitranscriptomics: RNA modifications (m6A, pseudouridine, inosine) and their regulatory roles in cellular processes
Liquid-liquid phase separation: Role of nucleic acids in biomolecular condensate formation and stress granule assembly
AI-driven nucleic acid design: Machine learning for predicting RNA structure, designing synthetic promoters, and optimizing CRISPR guides
Extracellular nucleic acids: Cell-free DNA/RNA as biomarkers, exosomal nucleic acids, and intercellular communication
Ancient DNA analysis: Paleogenomics, evolutionary insights from degraded nucleic acids, and forensic applications
Spatial transcriptomics: In situ sequencing technologies and tissue-level gene expression mapping
📄

Article Types & Editorial Priorities

Priority 1 - Fast Track

Expedited Review (14-21 days to first decision)

Priority 2 - Standard

Regular Review (21-35 days to first decision)

Rarely Considered

Selective Acceptance (requires exceptional novelty)

Editorial Standards & Requirements

Reporting Guidelines

  • ARRIVE guidelines for animal studies
  • MIAME standards for microarray data
  • MINSEQE for sequencing experiments
  • MIQE for qPCR studies
  • STROBE for observational studies

Data Availability

  • Raw sequencing data in public repositories (SRA, ENA, GEO)
  • Genome assemblies deposited in GenBank/EMBL
  • Structural data in PDB or EMDB
  • Code and scripts in GitHub or Zenodo
  • Data availability statement required

Ethics & Compliance

  • IRB/Ethics committee approval for human subjects
  • IACUC approval for animal research
  • Informed consent documentation
  • Biosafety and biosecurity compliance
  • Dual-use research oversight when applicable

Preprint & Prior Publication

  • Preprints on bioRxiv, medRxiv welcomed
  • Conference abstracts acceptable
  • Thesis chapters considered if unpublished
  • No prior publication in peer-reviewed journals
  • Preprint DOI must be disclosed at submission

Ready to Submit Your Research?

If your work advances understanding of DNA or RNA biology through rigorous experimental or computational approaches, we invite you to submit to JDRR.

Submit Manuscript